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d6305 software  (Zymo Research)


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    Structured Review

    Zymo Research d6305 software
    D6305 Software, supplied by Zymo Research, used in various techniques. Bioz Stars score: 96/100, based on 743 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/d6305+software/ZymoBIOMICS+Microbial+Community+DNA+Standard/pm41252249-244-32-29
    Average 96 stars, based on 743 article reviews
    d6305 software - by Bioz Stars, 2026-10
    96/100 stars

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    Related Articles

    Metagenomics:

    Article Title: From sporulation to village differentiation: The shaping of the social microbiome over rural-to-urban lifestyle transition in Indonesia.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Biological samples Human fecal samples Genome Diversity Disease Division, Mochtar Riady Institute for Nanotechnology https://mrinstitute.org/genome-diversityand-disease Chemicals, peptides, and recombinant proteins Omnigene ⋅ GUT DNA Genotek Cat# OMR-200 MOBIO PowerSoil DNA Isolation Kit Qiagen Cat# 12888-50 QIAamp PowerFecal DNA Kit Qiagen Cat# 12830-50 EB Buffer Qiagen Cat# 19086 Nuclease Free Water Ambion Cat# AM9937 Agarose (molecular biology grade) Thermo Scientific Cat# 17852 UltraPure Tris-Borate-EDTA Buffer, 10× Invitrogen Cat# 15581044 Critical commercial assays Qubit dsDNA Broad Range Kit Invitrogen Cat# Q32853 TruSeq DNA Nano Library Prep Illumina Cat# 20015965 NovaSeq 6000 SP Reagent Kit v1.5 (500 cycles) Illumina Cat# 20028402 Deposited data Raw metagenomic sequences This study https://ega-archive.org/studies/ EGAS50000000961 Metagenome Assembled Genome (MAG) list This study https://doi.org/10.6084/m9.figshare. .. 28660445 Unified Human Gastrointestinal Genome database Almeida et al. 8 https://ftp.ebi.ac.uk/pub/databases/ metagenomics/mgnify_genomes/humangut/v2.0.1 Singapore Platinum Metagenomes Project dataset Gounot et al. 9 https://www.ebi.ac.uk/ena/browser/view/ PRJEB49168 Oligonucleotides ZymoBIOMICS Microbial Community DNA Standard Zymo Research Cat# D6305 Software and algorithms metaWRAP v1.3.2 Uritskiy et al. 56 https://github.com/bxlab/metaWRAP Trim Galore v0.6.10 Krueger et al. 57 https://github.com/FelixKrueger/ TrimGalore bmtagger v1.1.0 https://ftp.ncbi.nlm.nih.gov/pub/agarwala/ bmtagger/ MEGAHIT v1.2.9 Li et al. 58 https://github.com/voutcn/megahit MaxBin2 v2.2.4 Wu et al. 59 https://sourceforge.net/projects/maxbin/ metaBAT2 v2.12.1 Kang et al. 60 https://bitbucket.org/berkeleylab/metabat CONCOCT v1.0.0 Alneberg et al. 61 https://github.com/BinPro/CONCOCT CheckM v1.0.18 Parks et al. 62 https://ecogenomics.github.io/CheckM dRep v3.4.5 Olm et al. 63 https://github.com/MrOlm/drep fastani Jain et al. 64 https://github.com/ParBLiSS/FastANI CheckM2 v1.0.2 Chklovski et al. 65 https://github.com/chklovski/CheckM2 GUNC v1.0.6 Orakov et al. 66 https://grp-bork.embl-community.io/gunc GTDB-tk v2.3.2 Chaumeil et al. 67 https://ecogenomics.github.io/GTDBTk IQ-TREE v2.3.3 Nguyen et al. 68 https://iqtree.github.io (Continued on next page) Cell Reports 44, 116573, November 25, 2025 15 ..

    Software:

    Article Title: From sporulation to village differentiation: The shaping of the social microbiome over rural-to-urban lifestyle transition in Indonesia.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Biological samples Human fecal samples Genome Diversity Disease Division, Mochtar Riady Institute for Nanotechnology https://mrinstitute.org/genome-diversityand-disease Chemicals, peptides, and recombinant proteins Omnigene ⋅ GUT DNA Genotek Cat# OMR-200 MOBIO PowerSoil DNA Isolation Kit Qiagen Cat# 12888-50 QIAamp PowerFecal DNA Kit Qiagen Cat# 12830-50 EB Buffer Qiagen Cat# 19086 Nuclease Free Water Ambion Cat# AM9937 Agarose (molecular biology grade) Thermo Scientific Cat# 17852 UltraPure Tris-Borate-EDTA Buffer, 10× Invitrogen Cat# 15581044 Critical commercial assays Qubit dsDNA Broad Range Kit Invitrogen Cat# Q32853 TruSeq DNA Nano Library Prep Illumina Cat# 20015965 NovaSeq 6000 SP Reagent Kit v1.5 (500 cycles) Illumina Cat# 20028402 Deposited data Raw metagenomic sequences This study https://ega-archive.org/studies/ EGAS50000000961 Metagenome Assembled Genome (MAG) list This study https://doi.org/10.6084/m9.figshare. .. 28660445 Unified Human Gastrointestinal Genome database Almeida et al. 8 https://ftp.ebi.ac.uk/pub/databases/ metagenomics/mgnify_genomes/humangut/v2.0.1 Singapore Platinum Metagenomes Project dataset Gounot et al. 9 https://www.ebi.ac.uk/ena/browser/view/ PRJEB49168 Oligonucleotides ZymoBIOMICS Microbial Community DNA Standard Zymo Research Cat# D6305 Software and algorithms metaWRAP v1.3.2 Uritskiy et al. 56 https://github.com/bxlab/metaWRAP Trim Galore v0.6.10 Krueger et al. 57 https://github.com/FelixKrueger/ TrimGalore bmtagger v1.1.0 https://ftp.ncbi.nlm.nih.gov/pub/agarwala/ bmtagger/ MEGAHIT v1.2.9 Li et al. 58 https://github.com/voutcn/megahit MaxBin2 v2.2.4 Wu et al. 59 https://sourceforge.net/projects/maxbin/ metaBAT2 v2.12.1 Kang et al. 60 https://bitbucket.org/berkeleylab/metabat CONCOCT v1.0.0 Alneberg et al. 61 https://github.com/BinPro/CONCOCT CheckM v1.0.18 Parks et al. 62 https://ecogenomics.github.io/CheckM dRep v3.4.5 Olm et al. 63 https://github.com/MrOlm/drep fastani Jain et al. 64 https://github.com/ParBLiSS/FastANI CheckM2 v1.0.2 Chklovski et al. 65 https://github.com/chklovski/CheckM2 GUNC v1.0.6 Orakov et al. 66 https://grp-bork.embl-community.io/gunc GTDB-tk v2.3.2 Chaumeil et al. 67 https://ecogenomics.github.io/GTDBTk IQ-TREE v2.3.3 Nguyen et al. 68 https://iqtree.github.io (Continued on next page) Cell Reports 44, 116573, November 25, 2025 15 ..



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    96
    Zymo Research d6305 software
    D6305 Software, supplied by Zymo Research, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/d6305+software/ZymoBIOMICS+Microbial+Community+DNA+Standard/pm41252249-244-32-29
    Average 96 stars, based on 1 article reviews
    d6305 software - by Bioz Stars, 2026-10
    96/100 stars
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